Dune overview
Dune is an R Package that provides a parameter-free method for optimizing the trade-off between the resolutionof the clusters and their replicability across datasets. Dune method takes as input a set of clustering results on a dataset, and iteratively merges clusters within those clusterings in order to maximize their concordance.
Installation
To install the current version of Dune , you will need Bioconductor 3.11 (i.e devel version):
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Dune")A version compatible with R 3.6 is also available with the following commands:
if(!requireNamespace("devtools", quietly = TRUE)) {
install.packages("devtools")
}
devtools::install_github("HectorRDB/Dune", ref = "before_bioc_release")The installation should only take a few seconds. The dependencies of the package are listed in the DESCRIPTION file of the package.
Issues and bug reports
Please use the github issues to submit issues, bug reports, and comments.
Usage
Start with the vignette online.
