differential Topology

Those are the functions used for the first step of the condiments workflow

imbalance_score()

Imbalance Score

topologyTest()

Differential Topology Test

differential progression and differentiation

Those are the functions used for the second step of the condiments workflow

differentiationTest()

Differential Differentiation Test

progressionTest()

Differential Progression Test

Example datasets

This is all the tools to create toy datasets in order to run the examples or discover the other functions

toy_dataset

A toy dataset used in the vignette and in the examples

create_differential_topology()

Create Example function

Slinghsot Helper

A few helpful functions to run slinghsot when under multiple conditions.

merge_sds()

Merge slingshots datasets

nLineages()

Number of lineages

slingshot_conditions()

Refitting slingshot per condition